This blog will keep tracking the development of Interfacing pygr with Clustalw alignment, BLASTZ alignment, BLAT alignment, LAGAN alignment, MLAGAN alignment, and gmap alignment. The Project is part of Google summer of Code 2009, and will be mentored by Dr. Titus Brown and Jenny Qing Qian , to both of whom I am very grateful.
Currently, Pygr is interfaced only with BLAST alignment program.
For the actual interfaces, I will write separate Python modules (by the way, Python is the language I am using). Before mid-term evaluation (which is on July 06, 2009), I plan to finish the first three alignment programs and the remaining three will be finished after the mid-term. So far I have finished interfacing Clustalw and blastz with pygr.
The mainstay of this blog will be progress reports. Comments are welcome.
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