tag:blogger.com,1999:blog-1442467302759878098Wed, 24 Jun 2009 04:47:13 +0000http://edenelos.blogspot.com/noreply@blogger.com (Eden Elos)Blogger1125tag:blogger.com,1999:blog-1442467302759878098.post-2987568327012843376Thu, 18 Jun 2009 21:05:00 +00002009-06-23T21:47:13.655-07:00This blog will keep tracking the development of Interfacing pygr with Clustalw alignment, BLASTZ alignment, BLAT alignment, LAGAN alignment, MLAGAN alignment, and gmap alignment. <span class="yshortcuts" id="lw_1245818568_0">The Project</span> is part of <span style="border-bottom: 1px dashed rgb(0, 102, 204); background: transparent none repeat scroll 0% 0%; cursor: pointer; -moz-background-clip: -moz-initial; -moz-background-origin: -moz-initial; -moz-background-inline-policy: -moz-initial;" class="yshortcuts" id="lw_1245818568_1">Google</span> summer of Code 2009, and will be mentored by <span style="border-bottom: 1px dashed rgb(0, 102, 204); cursor: pointer;" class="yshortcuts" id="lw_1245818568_2">Dr. Titus Brown</span> and Jenny Qing Qian , to both of whom I am very grateful.<br />Currently, Pygr is interfaced only with BLAST alignment program.<br /><br /><br />For the actual interfaces, I will write separate Python modules (by the way, Python is the language I am using). Before mid-term evaluation (which is on July 06, 2009), I plan to finish the first three alignment programs and the remaining three will be finished after the mid-term. So far I have finished interfacing Clustalw and blastz with pygr.<br />The mainstay of this blog will be progress reports. Comments are welcome.<div class="blogger-post-footer"><img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1442467302759878098-2987568327012843376?l=edenelos.blogspot.com' alt='' /></div>http://edenelos.blogspot.com/2009/06/status-update.htmlnoreply@blogger.com (Eden Elos)0